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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_40568318_40568429_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
40568318 - 40568429
Intron Length:
112

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTCCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTAAT
U12 Branch Point Sequence:
TATGTAATAACA
Flanking Amino Acid:
NYVHVKPAAAGGDLKKHLML
Intron Amino Acid Position:
891

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
74.5
32.2
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
89.7
0.89
0.6
89.1
19.9
Minor 5ss
34.6
-1.8
2.8
35.2
41.4
Minor BPS
49.1
-0
1.9
66.48
39.5

Associated Gene:

Gene:
RFC1
Ensembl Gene ID:
ENSAPLG00000010594
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034003
40564906 - 40582809
17904
ENSAPLT00000023981
40565225 - 40604804
39580
ENSAPLT00000011129
40565225 - 40604804
39580