Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_40569418_40569853_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

40569418 - 40569853

Intron Length:

436

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGAAGG

5'SS Class:

strong_major

3'SS Sequence:

GTATGTGTTACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTCAG

U12 Branch Point Sequence:

TTTCTGGTGACA

Flanking Amino Acid:

FQRPRLEQIKGAMMSIAFKE

Intron Amino Acid Position:

775

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.9

0.94

0.8

75.5

40.6

Major BPS

0.52

1.5

79.6

35.6

Major PPT

72.3

0.5

1.1

64.7

45.6

Minor 5ss

32.9

-2

2.9

40.4

45.3

Minor BPS

44.9

-0.4

2.6

67.06

39.6

Associated Gene:

Gene:

RFC1

Ensembl Gene ID:

ENSAPLG00000010594

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023981

40565225 - 40604804

39580

ENSAPLT00000011129

40565225 - 40604804

39580

ENSAPLT00000034003

40564906 - 40582809

17904