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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_40571014_40571394_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
40571014 - 40571394
Intron Length:
381

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTACGTTTG
5'SS Class:
major
3'SS Sequence:
CGTTCATTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TCCACGTTCATT
Flanking Amino Acid:
NNTSIKDFCSGTSSSVSGKH
Intron Amino Acid Position:
699

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
71.6
40.8
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
80.9
0.69
0.9
77.3
35.9
Minor 5ss
42.9
-0.8
3
54.6
44.9
Minor BPS
45.1
-0.3
2.4
63.64
47.2

Associated Gene:

Gene:
RFC1
Ensembl Gene ID:
ENSAPLG00000010594
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034003
40564906 - 40582809
17904
ENSAPLT00000023981
40565225 - 40604804
39580
ENSAPLT00000011129
40565225 - 40604804
39580