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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_40575686_40576031_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
40575686 - 40576031
Intron Length:
346

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
CTTATTTTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TACCTCTTAATT
Flanking Amino Acid:
RDCGQSKCEKASALGTKIID
Intron Amino Acid Position:
457

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93
1.01
0.7
86.9
30.1
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
79.4
0.66
0.8
72.9
37.3
Minor 5ss
32
-2.1
2.8
42.5
44.3
Minor BPS
70.7
0.73
1.2
78.1
38.4

Associated Gene:

Gene:
RFC1
Ensembl Gene ID:
ENSAPLG00000010594
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034003
40564906 - 40582809
17904
ENSAPLT00000023981
40565225 - 40604804
39580
ENSAPLT00000011129
40565225 - 40604804
39580