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Intron Name: Anas_platyrhynchos_platyrhynchos_4_40576212_40576769_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

40576212 - 40576769

Intron Length:

558

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTAAGTTTG

5'SS Class:

strong_major

3'SS Sequence:

TTACGGTTCTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AGTTAAT

U12 Branch Point Sequence:

TTTTCTACAATG

Flanking Amino Acid:

KALGSKEIPQGAENCLEGLT

Intron Amino Acid Position:

397

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.5

0.86

0.9

81.6

33.2

Major BPS

75.6

0.64

1.1

75.7

36.5

Major PPT

72.4

0.5

68.9

41.7

Minor 5ss

45.5

-0.5

2.8

58.6

40.2

Minor BPS

55.5

0.03

1.9

68.5

39.4

Associated Gene:

Gene:

RFC1

Ensembl Gene ID:

ENSAPLG00000010594

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034003

40564906 - 40582809

17904

ENSAPLT00000023981

40565225 - 40604804

39580

ENSAPLT00000011129

40565225 - 40604804

39580