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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_40576878_40577825_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
40576878 - 40577825
Intron Length:
948

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGAGCT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTGCCCAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATCTATTT
Flanking Amino Acid:
KEKISPKKAESVSPEDSEKK
Intron Amino Acid Position:
361

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
72.5
37.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
68.5
0.42
1.1
67.5
38.2
Minor 5ss
31.7
-2.1
3.6
47.8
47.9
Minor BPS
47.6
-0.1
2
71.93
39.3

Associated Gene:

Gene:
RFC1
Ensembl Gene ID:
ENSAPLG00000010594
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023981
40565225 - 40604804
39580
ENSAPLT00000011129
40565225 - 40604804
39580
ENSAPLT00000034003
40564906 - 40582809
17904