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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_40581641_40582380_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
40581641 - 40582380
Intron Length:
740

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGAGTACT
5'SS Class:
strong_major
3'SS Sequence:
CTCTTAAATATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAA
U12 Branch Point Sequence:
CCCCTCTTAAAT
Flanking Amino Acid:
KKLVASKRKEPSQSRDSTVD
Intron Amino Acid Position:
188

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
83.3
27.9
Major BPS
77.8
0.69
1
78.2
31.8
Major PPT
68.4
0.41
0.9
62.9
36.5
Minor 5ss
34.6
-1.7
2.8
44.2
37
Minor BPS
57.2
0.3
1.5
65.72
44.9

Associated Gene:

Gene:
RFC1
Ensembl Gene ID:
ENSAPLG00000010594
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023981
40565225 - 40604804
39580
ENSAPLT00000011129
40565225 - 40604804
39580
ENSAPLT00000034003
40564906 - 40582809
17904