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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_40597367_40599097_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
40597367 - 40599097
Intron Length:
1731

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
ATGTTGCTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
GACTCATTTACT
Flanking Amino Acid:
SGKKRGKETKVKNSPSEDVP
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
1
89
25.8
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
69.3
0.43
0.9
66.6
40
Minor 5ss
42.5
-0.8
2.8
59
45.4
Minor BPS
54.2
0.21
2
71.36
44.7

Associated Gene:

Gene:
RFC1
Ensembl Gene ID:
ENSAPLG00000010594
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011129
40565225 - 40604804
39580
ENSAPLT00000023981
40565225 - 40604804
39580