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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_40599227_40604801_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
40599227 - 40604801
Intron Length:
5575

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGGCGG
5'SS Class:
major
3'SS Sequence:
TTCTTTTTAATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TTCTTTTTAATA
Flanking Amino Acid:
MDIRKFFGVVP
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1
53.1
45.3
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
82.5
0.73
0.8
80.9
29.7
Minor 5ss
24.8
-2.9
3
26.3
37.9
Minor BPS
75.4
0.79
1.1
78
33.3

Associated Gene:

Gene:
RFC1
Ensembl Gene ID:
ENSAPLG00000010594
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023981
40565225 - 40604804
39580
ENSAPLT00000011129
40565225 - 40604804
39580