About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_40611334_40619111_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
40611334 - 40619111
Intron Length:
7778

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAGTAT
5'SS Class:
major
3'SS Sequence:
TTTCTCTTACCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTCTCTTACCA
Flanking Amino Acid:
VYTVGHNLIKAHAKVWHNYK
Intron Amino Acid Position:
247

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.1
69.1
38
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
83.7
0.76
0.8
78.1
35
Minor 5ss
36.7
-1.5
3.6
55.1
49.1
Minor BPS
69.3
0.6
1.6
80.35
35.4

Associated Gene:

Gene:
KLB
Ensembl Gene ID:
ENSAPLG00000011369
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011828
40610596 - 40627793
17198