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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_40619620_40623255_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
40619620 - 40623255
Intron Length:
3636

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGTGCG
5'SS Class:
major
3'SS Sequence:
TTCTCTTACGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TTTCTCTTACGC
Flanking Amino Acid:
MKNFINKVLQAIKYDNIDVF
Intron Amino Acid Position:
416

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1.2
63.6
40.8
Major BPS
84.4
0.85
1
84
34.5
Major PPT
80.1
0.68
0.8
76.8
30.7
Minor 5ss
35.5
-1.7
2.9
42
44.7
Minor BPS
55.4
0.15
1.9
71.01
40.5

Associated Gene:

Gene:
KLB
Ensembl Gene ID:
ENSAPLG00000011369
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011828
40610596 - 40627793
17198