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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_40625736_40627431_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
40625736 - 40627431
Intron Length:
1696

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCCTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATCAT
U12 Branch Point Sequence:
TAATCATTCATT
Flanking Amino Acid:
LGKYVQEVLKAYYIDKVKIR
Intron Amino Acid Position:
887

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.7
1.05
0.6
92.2
16.3
Major BPS
80.4
0.76
1
80.3
31.8
Major PPT
86
0.81
0.7
77.5
31.2
Minor 5ss
33.9
-1.8
2.8
41.8
44.8
Minor BPS
54.4
0.22
2
75.44
41

Associated Gene:

Gene:
KLB
Ensembl Gene ID:
ENSAPLG00000011369
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011828
40610596 - 40627793
17198