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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_4062857_4063366_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4062857 - 4063366
Intron Length:
510

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCATGAA
U12 Branch Point Sequence:
GTGTCATGAAAT
Flanking Amino Acid:
INELKRRKDLVLKYKRNDDD
Intron Amino Acid Position:
395

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
62.9
0.32
1.1
53.9
41.5
Major PPT
85.8
0.81
0.7
80.7
24.4
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
52.9
0.17
1.9
72.82
43

Associated Gene:

Gene:
ARHGEF38
Ensembl Gene ID:
ENSAPLG00000010561
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010994
4039884 - 4073668
33785