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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_40631677_40632172_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
40631677 - 40632172
Intron Length:
496

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTGAA
5'SS Class:
major
3'SS Sequence:
GCTTTGTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GGTTAAT
U12 Branch Point Sequence:
TTTAGGTTAATG
Flanking Amino Acid:
GNDIELVSNSAALIQQATTV
Intron Amino Acid Position:
158

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.1
71.4
33.7
Major BPS
66.6
0.41
1.4
69.7
44.2
Major PPT
82.4
0.73
0.9
76.3
37.7
Minor 5ss
34.4
-1.8
2.9
40.7
45.6
Minor BPS
48
-0.2
2.5
63.64
44.7

Associated Gene:

Gene:
RPL9
Ensembl Gene ID:
ENSAPLG00000011712
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012247
40631570 - 40635240
3671