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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_40633769_40634092_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
40633769 - 40634092
Intron Length:
324

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTATCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAC
U12 Branch Point Sequence:
TGTCCTTTATCC
Flanking Amino Acid:
VQNMIKGVTLGFRYKMRSVY
Intron Amino Acid Position:
87

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
80.5
34.9
Major BPS
75.8
0.64
0.9
75.6
25.3
Major PPT
80.1
0.68
0.8
73
36
Minor 5ss
42.1
-0.9
2.9
55.5
43.9
Minor BPS
63.7
0.41
1.6
72.65
38.2

Associated Gene:

Gene:
RPL9
Ensembl Gene ID:
ENSAPLG00000011712
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012247
40631570 - 40635240
3671