About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_40634189_40635004_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
40634189 - 40635004
Intron Length:
816

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGGAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTAACCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
GTTTTTTTAACC
Flanking Amino Acid:
LSLLGKKRKKLRVDKWWGNR
Intron Amino Acid Position:
55

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.8
78.2
31.2
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
80.8
0.69
0.9
74.8
39
Minor 5ss
25.4
-2.8
3.5
36.8
47.7
Minor BPS
79.9
0.92
1
82.49
30.8

Associated Gene:

Gene:
RPL9
Ensembl Gene ID:
ENSAPLG00000011712
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012247
40631570 - 40635240
3671