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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_40637644_40637885_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
40637644 - 40637885
Intron Length:
242

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCCGT
5'SS Class:
major
3'SS Sequence:
TTTCTTATTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
CCTTTCTTATTT
Flanking Amino Acid:
EHATATATIMLMGDTCTRGC
Intron Amino Acid Position:
128

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
65.4
46
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
90.7
0.92
0.7
89.4
25.6
Minor 5ss
39.7
-1.2
3.2
53.5
45.5
Minor BPS
62.5
0.47
1.6
74.56
43.3

Associated Gene:

Gene:
LIAS
Ensembl Gene ID:
ENSAPLG00000011896
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012402
40635755 - 40643936
8182