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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_40650342_40650430_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
40650342 - 40650430
Intron Length:
89

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAATA
5'SS Class:
strong_major
3'SS Sequence:
TTGCTTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATGCTTTAATT
Flanking Amino Acid:
VICTEWDMFKELDYERIHKK
Intron Amino Acid Position:
422

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
83.2
28.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
88.3
0.86
0.7
83.5
31.6
Minor 5ss
36.4
-1.5
3.1
48.8
46.9
Minor BPS
75
0.86
1.3
84.68
36.4

Associated Gene:

Gene:
UGDH
Ensembl Gene ID:
ENSAPLG00000012168
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012683
40649463 - 40660364
10902