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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_40650523_40651485_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
40650523 - 40651485
Intron Length:
963

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAATG
5'SS Class:
strong_major
3'SS Sequence:
CCTTCTGTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTTAT
U12 Branch Point Sequence:
AAAACTTTATTT
Flanking Amino Acid:
SHPGVSEDNQVSRLVTISKD
Intron Amino Acid Position:
391

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.6
1
0.8
84.6
33.3
Major BPS
75.1
0.62
1
65.6
41
Major PPT
81.3
0.7
0.8
75.1
33.3
Minor 5ss
37.1
-1.5
3
48.5
47.2
Minor BPS
52.2
0.15
1.6
65.24
39.3

Associated Gene:

Gene:
UGDH
Ensembl Gene ID:
ENSAPLG00000012168
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012683
40649463 - 40660364
10902