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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_4065244_4066433_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4065244 - 4066433
Intron Length:
1190

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTACA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTCATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
GTTTTTTCATCT
Flanking Amino Acid:
NISSSSQHLQDSIHLAAQNI
Intron Amino Acid Position:
475

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
76.7
33.9
Major BPS
100
1.24
0.5
100
0
Major PPT
79
0.65
0.8
78.2
29.5
Minor 5ss
29.2
-2.4
2.8
33.9
41.6
Minor BPS
55.2
0.24
1.8
76.37
40.5

Associated Gene:

Gene:
ARHGEF38
Ensembl Gene ID:
ENSAPLG00000010561
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010994
4039884 - 4073668
33785