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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_40656405_40657711_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
40656405 - 40657711
Intron Length:
1307

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGTTTA
5'SS Class:
major
3'SS Sequence:
TATCTGTAACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTATAAT
U12 Branch Point Sequence:
GTATCTGTAACT
Flanking Amino Acid:
IREADLVFISVNTPTKTYGM
Intron Amino Acid Position:
89

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1.1
77.4
33.6
Major BPS
75.5
0.63
1.1
76
34.4
Major PPT
62.4
0.28
1
56.2
43.4
Minor 5ss
46.7
-0.3
2.8
68.1
42.7
Minor BPS
63.2
0.49
2
81.48
40.1

Associated Gene:

Gene:
UGDH
Ensembl Gene ID:
ENSAPLG00000012168
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012683
40649463 - 40660364
10902