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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_40657814_40660202_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
40657814 - 40660202
Intron Length:
2389

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAGTCA
5'SS Class:
strong_major
3'SS Sequence:
CTGCTTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTAAC
U12 Branch Point Sequence:
TTAACCATAACT
Flanking Amino Acid:
WNSDTLPIYEPGLKEVVESC
Intron Amino Acid Position:
55

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
71.7
34.2
Major BPS
69.5
0.49
1
71.3
30.3
Major PPT
85.7
0.8
0.8
83.9
31.1
Minor 5ss
36.4
-1.5
3.3
47.9
47.8
Minor BPS
70.6
0.73
1.6
87.33
37.3

Associated Gene:

Gene:
UGDH
Ensembl Gene ID:
ENSAPLG00000012168
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012683
40649463 - 40660364
10902