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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_40671372_40677982_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
40671372 - 40677982
Intron Length:
6611

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TCCTTGTCTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAC
U12 Branch Point Sequence:
TGTTTTATAACT
Flanking Amino Acid:
YCTDTECLQELPGPNFSGDN
Intron Amino Acid Position:
42

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
79.5
28.3
Major BPS
77.9
0.69
1
78.3
31.3
Major PPT
77.6
0.62
0.8
72.9
32
Minor 5ss
33
-1.9
2.8
41.3
38.3
Minor BPS
68.3
0.65
1.6
85.23
34.7

Associated Gene:

Gene:
SMIM14
Ensembl Gene ID:
ENSAPLG00000012479
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012990
40670732 - 40691856
21125