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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_40678032_40691781_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
40678032 - 40691781
Intron Length:
13750

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGGATG
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTCTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTCAT
U12 Branch Point Sequence:
TCATTGCTAACT
Flanking Amino Acid:
EHAMRRLINLLRQSQSYCTD
Intron Amino Acid Position:
26

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
75.2
40.6
Major BPS
77.2
0.67
1.2
79.6
35.6
Major PPT
88.3
0.86
0.7
80.7
31.3
Minor 5ss
36
-1.6
3.3
45.6
43.8
Minor BPS
48.9
-0
2.3
72.85
44

Associated Gene:

Gene:
SMIM14
Ensembl Gene ID:
ENSAPLG00000012479
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012990
40670732 - 40691856
21125