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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_4069325_4070963_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4069325 - 4070963
Intron Length:
1639

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
TTTGTGTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TTGTTCATGAGA
Flanking Amino Acid:
SNSSVVVPVPLSSSSICEVQ
Intron Amino Acid Position:
623

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
74.8
35.3
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
86.1
0.81
0.8
80.6
37
Minor 5ss
38.2
-1.3
2.7
49.5
40.3
Minor BPS
49.7
-0
1.9
66.48
40.2

Associated Gene:

Gene:
ARHGEF38
Ensembl Gene ID:
ENSAPLG00000010561
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010994
4039884 - 4073668
33785