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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_4072487_4072663_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4072487 - 4072663
Intron Length:
177

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TTCTGATATGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TGCTGCTTATTT
Flanking Amino Acid:
STSRWLVDTGNLKGYVYSSF
Intron Amino Acid Position:
736

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
84.2
27.2
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
71.6
0.49
0.9
66.8
38.7
Minor 5ss
44.5
-0.6
2.8
60
38.4
Minor BPS
53
0.17
2
72.14
45.2

Associated Gene:

Gene:
ARHGEF38
Ensembl Gene ID:
ENSAPLG00000010561
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010994
4039884 - 4073668
33785