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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_40751193_40754711_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
40751193 - 40754711
Intron Length:
3519

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGTGC
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTTGTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCCAT
U12 Branch Point Sequence:
ACTTTCCCATTC
Flanking Amino Acid:
DPQDAVVANQYKQNPEMFKQ
Intron Amino Acid Position:
367

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.7
0.91
0.9
73.9
38
Major BPS
72.3
0.55
1.2
80.7
33.2
Major PPT
78.9
0.65
0.8
76.2
32.4
Minor 5ss
37.1
-1.5
3.3
50.2
46.4
Minor BPS
42.9
-0.5
1.9
53.03
39

Associated Gene:

Gene:
UBE2K
Ensembl Gene ID:
ENSAPLG00000012484
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013015
40719037 - 40755103
36067