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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_40754841_40755028_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
40754841 - 40755028
Intron Length:
188

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTATC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCATTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TGTTTTCTCATT
Flanking Amino Acid:
ENLCAMGFDRNAVIVALSSK
Intron Amino Acid Position:
410

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.9
85.3
32.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
87
0.83
0.7
81.8
28.4
Minor 5ss
39.9
-1.1
2.8
46.6
41.8
Minor BPS
48.3
-0
2
72.39
39.2

Associated Gene:

Gene:
UBE2K
Ensembl Gene ID:
ENSAPLG00000012484
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013015
40719037 - 40755103
36067