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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_40777078_40780148_R

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
40777078 - 40780148
Intron Length:
3071

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGCATAT
5'SS Class:
major
3'SS Sequence:
CATTTTCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTACTTTTAAAA
Flanking Amino Acid:
ETRVLLLTGKPKPTGVLGTV
Intron Amino Acid Position:
1118

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.6
0.46
1.2
68.6
39.1
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
87.2
0.84
0.7
84.9
29.5
Minor 5ss
43.8
-0.7
3.3
64.3
47.2
Minor BPS
63.5
0.42
1.3
70.66
34.8

Associated Gene:

Gene:
PDS5A
Ensembl Gene ID:
ENSAPLG00000012563
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013244
40772834 - 40847444
74611