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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_40782175_40785304_R

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
40782175 - 40785304
Intron Length:
3130

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTGTC
5'SS Class:
major
3'SS Sequence:
TATGGCTTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTAAT
U12 Branch Point Sequence:
TGGAATGTAATT
Flanking Amino Acid:
QDVDQLRDVKECLWFMLEVL
Intron Amino Acid Position:
1023

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1
73.4
36.4
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
73.8
0.53
0.9
70.2
41
Minor 5ss
38.5
-1.3
3.3
49.1
41.3
Minor BPS
44.8
-0.3
2.1
61.99
42.4

Associated Gene:

Gene:
PDS5A
Ensembl Gene ID:
ENSAPLG00000012563
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013244
40772834 - 40847444
74611