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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_40786107_40786374_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
40786107 - 40786374
Intron Length:
268

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TATGTTGCTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TATGTTTTATGT
Flanking Amino Acid:
QFQLCALVINDECHQVRQIF
Intron Amino Acid Position:
917

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
1
83.5
27.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
71.9
0.49
0.9
65.8
40.7
Minor 5ss
38.5
-1.3
2.8
50.4
39.3
Minor BPS
48.1
-0
1.9
67.74
43.7

Associated Gene:

Gene:
PDS5A
Ensembl Gene ID:
ENSAPLG00000012563
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013244
40772834 - 40847444
74611