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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_40786499_40787208_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
40786499 - 40787208
Intron Length:
710

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGATTT
5'SS Class:
major
3'SS Sequence:
TGTGTTTGTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
TTTTCTTTTTTT
Flanking Amino Acid:
EGDLTEQKRISKSDMSRLRL
Intron Amino Acid Position:
875

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1.2
81.6
33.2
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
73.6
0.53
1
69.5
41.6
Minor 5ss
39.3
-1.2
3.2
56.7
47.5
Minor BPS
46.2
-0.2
3.6
83.31
38.3

Associated Gene:

Gene:
PDS5A
Ensembl Gene ID:
ENSAPLG00000012563
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013244
40772834 - 40847444
74611