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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_40787346_40788000_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
40787346 - 40788000
Intron Length:
655

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAATGAT
5'SS Class:
strong_major
3'SS Sequence:
TCATTTTTGATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTATTTTTATTT
Flanking Amino Acid:
EEVSPEVLAKVQAIKLLVRW
Intron Amino Acid Position:
830

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
79.9
27.7
Major BPS
100
1.24
0.5
100
0
Major PPT
74.2
0.55
1
72.3
37.6
Minor 5ss
28.3
-2.5
3.3
39.6
46.4
Minor BPS
64.7
0.54
1.5
79.8
36.8

Associated Gene:

Gene:
PDS5A
Ensembl Gene ID:
ENSAPLG00000012563
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013244
40772834 - 40847444
74611