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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_40788070_40788333_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
40788070 - 40788333
Intron Length:
264

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGATTG
5'SS Class:
strong_major
3'SS Sequence:
TGAGTATCTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
AGTTCTTAAACT
Flanking Amino Acid:
IVKDLLMNDRSTGEKNGKLW
Intron Amino Acid Position:
807

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1
72.5
39.9
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
66.3
0.37
1
59.6
41.7
Minor 5ss
41.1
-1
3.1
48.2
47.3
Minor BPS
69
0.67
1.6
82.97
38.2

Associated Gene:

Gene:
PDS5A
Ensembl Gene ID:
ENSAPLG00000012563
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013244
40772834 - 40847444
74611