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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_40789773_40792166_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
40789773 - 40792166
Intron Length:
2394

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATC|GTGAGTGTT
5'SS Class:
major
3'SS Sequence:
TTAATGTTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TATATTTTAAAT
Flanking Amino Acid:
KIETDLPQIRSTLIPILHQK
Intron Amino Acid Position:
712

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.5
0.46
1.3
74
36.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
74.7
0.56
1
68.4
41.9
Minor 5ss
34.7
-1.7
3.4
49.7
41.3
Minor BPS
65.7
0.57
1.4
78.88
36.8

Associated Gene:

Gene:
PDS5A
Ensembl Gene ID:
ENSAPLG00000012563
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013244
40772834 - 40847444
74611