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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_40792328_40793815_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
40792328 - 40793815
Intron Length:
1488

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATCTAA
5'SS Class:
strong_major
3'SS Sequence:
TGTATCTCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTGTTTTAATA
Flanking Amino Acid:
AIRAGLELLKVLSFTHPTSF
Intron Amino Acid Position:
659

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
73
34.2
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
80
0.68
0.9
73.1
37.2
Minor 5ss
43.2
-0.7
2.9
55.8
48.3
Minor BPS
71.7
0.68
1.3
78
33.3

Associated Gene:

Gene:
PDS5A
Ensembl Gene ID:
ENSAPLG00000012563
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013244
40772834 - 40847444
74611