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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_40793922_40794567_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
40793922 - 40794567
Intron Length:
646

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTATTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAA
U12 Branch Point Sequence:
CATCTCTTATTT
Flanking Amino Acid:
APVHIDSEAISALVKLMNKS
Intron Amino Acid Position:
623

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.7
1.1
0.7
87.9
29.3
Major BPS
75.6
0.64
1.1
77.7
37.1
Major PPT
82.7
0.74
0.7
81.6
28.7
Minor 5ss
43.8
-0.7
2.8
57.8
46.8
Minor BPS
56.2
0.27
1.6
69.92
41.4

Associated Gene:

Gene:
PDS5A
Ensembl Gene ID:
ENSAPLG00000012563
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013244
40772834 - 40847444
74611