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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_40794684_40796419_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
40794684 - 40796419
Intron Length:
1736

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
ACATTTCTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
ATTAGTATAATT
Flanking Amino Acid:
CSCKQADVCVREIARKLANP
Intron Amino Acid Position:
585

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
76.6
33.6
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
75.5
0.57
0.9
70.2
35.5
Minor 5ss
31.7
-2.1
3.1
36.4
42
Minor BPS
48.7
-0
2
71.81
39.5

Associated Gene:

Gene:
PDS5A
Ensembl Gene ID:
ENSAPLG00000012563
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013244
40772834 - 40847444
74611