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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_40796729_40797500_R

Intron Information:

Intron Rank:
13
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
40796729 - 40797500
Intron Length:
772

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTACGGTTT
5'SS Class:
weak_major
3'SS Sequence:
CTGTCCTCCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
GTTTGTTTATTT
Flanking Amino Acid:
ELLDLHKQPTSEANSAAMFG
Intron Amino Acid Position:
522

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.7
0.32
1.1
64.7
42
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
74
0.54
0.8
65.6
36.1
Minor 5ss
43.8
-0.7
3.6
69.3
42.6
Minor BPS
54.6
0.22
2
76.04
41.4

Associated Gene:

Gene:
PDS5A
Ensembl Gene ID:
ENSAPLG00000012563
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013244
40772834 - 40847444
74611