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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_40798216_40801505_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
40798216 - 40801505
Intron Length:
3290

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTCAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCCCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
TTGACCCAAAGA
Flanking Amino Acid:
HIYYQNSIDDKLLVEKIFAQ
Intron Amino Acid Position:
456

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
0.9
73
33.2
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
86.8
0.83
0.7
81.5
23.5
Minor 5ss
29.8
-2.3
2.8
32.3
35.9
Minor BPS
44.8
-0.3
2.2
60.56
45.2

Associated Gene:

Gene:
PDS5A
Ensembl Gene ID:
ENSAPLG00000012563
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013244
40772834 - 40847444
74611