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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_40806412_40807291_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
40806412 - 40807291
Intron Length:
880

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGATGC
5'SS Class:
major
3'SS Sequence:
CTTTTCATAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CTTTTCATAACA
Flanking Amino Acid:
NHPDLAKDLTEYLKVRSHDP
Intron Amino Acid Position:
357

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
0.9
64.7
36.1
Major BPS
100
1.24
0.5
100
0
Major PPT
78.6
0.64
0.9
74.4
33.8
Minor 5ss
33
-1.9
3
38.6
41
Minor BPS
69.9
0.62
1.6
79.79
36.3

Associated Gene:

Gene:
PDS5A
Ensembl Gene ID:
ENSAPLG00000012563
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013244
40772834 - 40847444
74611