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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_40807387_40808190_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
40807387 - 40808190
Intron Length:
804

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
CCTATCTCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
TAAAAATTAACA
Flanking Amino Acid:
NRPLWQCFLGRFNDIHVPVR
Intron Amino Acid Position:
325

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
1
71.7
33.7
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
74.3
0.55
0.8
65.9
35.9
Minor 5ss
30.2
-2.3
3.3
39
46.2
Minor BPS
52.6
0.08
1.8
65.38
39.6

Associated Gene:

Gene:
PDS5A
Ensembl Gene ID:
ENSAPLG00000012563
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013244
40772834 - 40847444
74611