About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_40809514_40811457_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
40809514 - 40811457
Intron Length:
1944

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTATGTCAA
5'SS Class:
major
3'SS Sequence:
ATTTGCGTTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
ATCTTCTAAACC
Flanking Amino Acid:
VQTIEPCIANFFNQVLVLGK
Intron Amino Acid Position:
240

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1.1
68.8
37.4
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
72
0.5
1
62.8
43.6
Minor 5ss
42
-0.9
2.8
53.8
43.7
Minor BPS
64.4
0.43
1.7
71.85
39.7

Associated Gene:

Gene:
PDS5A
Ensembl Gene ID:
ENSAPLG00000012563
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013244
40772834 - 40847444
74611