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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_40811539_40815430_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
40811539 - 40815430
Intron Length:
3892

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCTGCAAA
5'SS Class:
major
3'SS Sequence:
CCCCTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
CTCTCTTTAAAA
Flanking Amino Acid:
ILINLIPAHKNLNKQAFDLA
Intron Amino Acid Position:
213

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.1
0.43
1.3
66.8
40.4
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
84.8
0.78
0.7
82.9
25.6
Minor 5ss
40.2
-1.1
2.6
48.6
47.2
Minor BPS
68.9
0.59
1.4
71.99
40.5

Associated Gene:

Gene:
PDS5A
Ensembl Gene ID:
ENSAPLG00000012563
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013244
40772834 - 40847444
74611