Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_408301_409114_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

408301 - 409114

Intron Length:

814

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCA|GTAAGTATT

5'SS Class:

strong_major

3'SS Sequence:

TCCCTCCAAATAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCAAAT

U12 Branch Point Sequence:

TGTTTATGAACT

Flanking Amino Acid:

KFQYEAFRSSRLSSDATVLT

Intron Amino Acid Position:

171

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.5

0.72

32.3

Major BPS

77.3

0.68

81.5

Major PPT

62.5

0.28

0.9

58.8

30.5

Minor 5ss

43.9

-0.7

2.9

66.1

38.6

Minor BPS

63.2

0.49

1.7

82.97

37.4

Associated Gene:

Gene:

AP1AR

Ensembl Gene ID:

ENSAPLG00000013936

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014532

395267 - 410869

15603