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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_4083167_4084087_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4083167 - 4084087
Intron Length:
921

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGCAG
5'SS Class:
major
3'SS Sequence:
TTCTTTATTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
ATTTCTTTATTT
Flanking Amino Acid:
FLAFKRTEVKTSAAVSGNTA
Intron Amino Acid Position:
271

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1.1
62.4
43.6
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
86
0.81
0.7
85.7
27.3
Minor 5ss
30.2
-2.3
3.2
38.2
46.7
Minor BPS
71.8
0.76
1.5
85.98
34.4

Associated Gene:

Gene:
INTS12
Ensembl Gene ID:
ENSAPLG00000010592
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011045
4082253 - 4091521
9269