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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_4084241_4084919_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4084241 - 4084919
Intron Length:
679

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGAGTC
5'SS Class:
major
3'SS Sequence:
TTTTTCTATACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TTTTTCTATACA
Flanking Amino Acid:
ARCTRQMKRMAQKTQKPPQK
Intron Amino Acid Position:
220

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1
66
38.4
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
88.9
0.87
0.8
84.8
29
Minor 5ss
33.7
-1.9
3.7
46.5
43.6
Minor BPS
61.2
0.35
2
78.67
37.8

Associated Gene:

Gene:
INTS12
Ensembl Gene ID:
ENSAPLG00000010592
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011045
4082253 - 4091521
9269