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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_4085080_4088526_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4085080 - 4088526
Intron Length:
3447

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTCAA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTCTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
CTGTTCTTAACT
Flanking Amino Acid:
MEMGLACVVCRQMTVISGNQ
Intron Amino Acid Position:
166

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.1
1.06
0.7
83.2
30.8
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
87.2
0.84
0.7
82
29.2
Minor 5ss
33.5
-1.9
2.9
40.7
45.5
Minor BPS
80.5
1.03
1.2
87.1
39

Associated Gene:

Gene:
INTS12
Ensembl Gene ID:
ENSAPLG00000010592
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011045
4082253 - 4091521
9269