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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_40873563_40879474_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
40873563 - 40879474
Intron Length:
5912

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
CTCTTCTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
AAGTTGTTGATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
89.9
23.2
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
87.6
0.85
0.7
80.1
32
Minor 5ss
48.6
-0.1
2.8
71.8
38.1
Minor BPS
48.5
-0
2
64.88
40.3

Associated Gene:

Gene:
N4BP2
Ensembl Gene ID:
ENSAPLG00000013613
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014194
40873386 - 40902632
29247
ENSAPLT00000030075
40872923 - 40902632
29710