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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_40879790_40881116_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
40879790 - 40881116
Intron Length:
1327

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATAAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTATTCAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTTTCTTTATTC
Flanking Amino Acid:
YMVLSECDFKVENAMDYLLE
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.91
0.8
85.6
24.6
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
77.9
0.63
0.9
73.7
35.4
Minor 5ss
34.4
-1.8
2.8
41.8
44.8
Minor BPS
73.1
0.7
1.5
81.83
32.8

Associated Gene:

Gene:
N4BP2
Ensembl Gene ID:
ENSAPLG00000013613
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014194
40873386 - 40902632
29247
ENSAPLT00000030075
40872923 - 40902632
29710